TheCellMap
  • Start a new search
  • Advanced
    • Settings
    • Style
    • Login
  • Download Dataset
  • About
  • Bioprocesses (Costanzo et al, 2010)
  • GO SLIM
  • Human Disease Orthologs
  • Protein complexes (Costanzo et al, 2016)
  • Protein Localization (Huh et. al, 2003)
  • Protein Localization (Koh et al, 2015)
  • SAFE (Costanzo et al, 2016)
  • Custom...
  • None

Overlay Data

SAFE analysis to identify regions of the global similarity network that are significantly enriched for genes exhibiting negative or positive genetic interactions with a gene of interest (see Fig. 9 in Costanzo et al 2016 for an example). Or, upload a gene list and identify network regions that are significantly enriched for your favourite genes.


  • Selected Genes
  • Upload a Gene List
Overlay genetic interactions for selected gene mutant
Paste a list of genes into the textbox below
 
  • Add more...

Legend

     

    AnnotationDominant

    Copy Selected Nodes

    Settings

    • Network
    • Custom Uploads
    • Annotations
    • Display node label on networks with less than 100 nodes
    • Disable mouse scroll to zoom
    • Show network background on SVG export
    • Show network legend on SVG export
    • Save screenshot as SVG
    • Always create custom networks as private
    • Download file type:
      xls file
    • Remove genes that are not within input annotation

    Network Style

    • Node
    • Edge
    • General
    • Annotations
    • Node Size:
    • Label Size:
    • Label Threshold:
    • Label Color:
    • Edge Width:
    • Background Color:

    Upload cutom annotations

    Please upload na Excel® spreadsheet with your custom gene annotations in a gene -> term pair format. If a gene belongs to more than one term use multiple lines.

    Only the first sheet in the uploaded file is used and it must have a header row and two columns (both required):

    ORF
    Gene's systematic name (ie: YNL271C).
    Annotation
    Annotation text.
    • View Network
    • Download Interactions
    • Go to SGD
    • Copy Selected Nodes
    • Edit Node Attributes...
    • Delete Node
    • Copy Selected Nodes
    • Download visible network
    • Download visible nodes
    • Analyze Visible Network in Yeastmine
    • Take a Snapshot
    • Hide/Show Node Labels
    • Hide/Show Annotation Labels
    • Hide/Show Annotation Colors
    • Re-Enable Tour
    • Style Options

    Rotate graph by an arbitrary angle

    degrees